Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs60065367 chr17:74663080 T/C 1.16E-6 170 25.53 24.37 10.28 KM Plot
PCPG rs6006606 chr22:44392658 C/T 0.00011 176 24.5 27.47 19.87 KM Plot
PCPG rs60114386 chr7:158688706 G/T 0 177 25.53 20.37 3.17 KM Plot
PCPG rs60192809 chr12:56701379 G/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs60221713 chr16:87327302 C/T 1.11E-16 170 23.03 30.63 2.22 KM Plot
PCPG rs60242987 chr17:65798891 A/G 0.000405 175 24.37 36 8.22 KM Plot
PCPG rs60243223 chr2:176180413 T/C 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs60243961 chr12:53502221 C/CT 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs60375889 chr2:176132099 C/T 0.000138 175 25.4 28.38 6.62 KM Plot
PCPG rs6038330 chr20:6001469 G/A 0 178 25.67 23.08 2.93 KM Plot
PCPG rs60420669 chr10:69788149 A/G 0 177 25.87 18.2 2.28 KM Plot
PCPG rs60496800 chr18:74538074 AT/A 6.2E-9 176 25.53 25.17 10.17 KM Plot
PCPG rs6053834 chr20:6006528 A/C 0 177 25.67 22.63 2.93 KM Plot
PCPG rs6053835 chr20:6011122 A/G 0 177 25.67 22.63 2.93 KM Plot
PCPG rs60542959 chr12:56660905 G/T 1.09E-7 177 25.17 27.33 0.8 KM Plot